Rebholz-Schuhmann, D.: search on Z-Library

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1

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases

Collier, Nigel, Groza, Tudor, Smedley, Damian, Robinson, Peter N., Oellrich, Anika, Rebholz-Schuhmann, Dietrich

Journal:

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

2

Text-mining solutions for biomedical research: enabling integrative biology

Rebholz-Schuhmann, Dietrich, Oellrich, Anika, Hoehndorf, Robert

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 599 KB

english, 2012

3

Disease mentions in airport and hospital geolocations expose dominance of news events for disease concerns

Barros, Joana M., Duggan, Jim, Rebholz-Schuhmann, Dietrich

Journal:

Journal of Biomedical Semantics

Year:

2018

Language:

english

File:

PDF, 1.74 MB

english, 2018

4

A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC

Kors, Jan A, Clematide, Simon, Akhondi, Saber A, van Mulligen, Erik M, Rebholz-Schuhmann, Dietrich

Journal:

Journal of the American Medical Informatics Association

Year:

2015

Language:

english

File:

PDF, 745 KB

english, 2015

5

[IEEE 2017 IEEE International Conference on Big Data (Big Data) - Boston, MA (2017.12.11-2017.12.14)] 2017 IEEE International Conference on Big Data (Big Data) - Querying web polystores

Khan, Yasar, Zimmermann, Antoine, Jha, AlokKumar, Rebholz-Schuhmann, Dietrich, Sahay, Ratnesh

Year:

2017

Language:

english

File:

PDF, 362 KB

english, 2017

6

Automatic recognition of conceptualization zones in scientific articles and two life science applications

Liakata, M., Saha, S., Dobnik, S., Batchelor, C., Rebholz-Schuhmann, D.

Journal:

Year:

2012

Language:

english

File:

PDF, 715 KB

english, 2012

7

Assessment of disease named entity recognition on a corpus of annotated sentences

Antonio Jimeno, Ernesto Jimenez-Ruiz, Vivian Lee, Sylvain Gaudan, Rafael Berlanga, Dietrich Rebholz-Schuhmann

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 343 KB

english, 2008

8

The functional therapeutic chemical classification system

Croset, S., Overington, J. P., Rebholz-Schuhmann, D.

Journal:

Year:

2014

Language:

english

File:

PDF, 739 KB

english, 2014

9

Three Hybrid Classifiers for the Detection of Emotions in Suicide Notes

Liakata, Maria, Kim, Jee-Hyub, Saha, Shyamasree, Hastings, Janna, Rebholz-Schuhmann, Dietrich

Journal:

Biomedical Informatics Insights

Year:

2012

Language:

english

File:

PDF, 535 KB

english, 2012

10

The Validity of Google Trends Search Volumes for Behavioral Forecasting of National Suicide Rates in Ireland

Barros, Joana M., Melia, Ruth, Francis, Kady, Bogue, John, O’Sullivan, Mary, Young, Karen, Bernert, Rebecca A., Rebholz-Schuhmann, Dietrich, Duggan, Jim

Journal:

International Journal of Environmental Research and Public Health

Year:

2019

Language:

english

File:

PDF, 3.09 MB

english, 2019

11

EBIMed--text crunching to gather facts for proteins from Medline

Rebholz-Schuhmann, D., Kirsch, H., Arregui, M., Gaudan, S., Riethoven, M., Stoehr, P.

Journal:

Year:

2007

Language:

english

File:

PDF, 409 KB

english, 2007

12

Brain: biomedical knowledge manipulation

Croset, S., Overington, J. P., Rebholz-Schuhmann, D.

Journal:

Year:

2013

Language:

english

File:

PDF, 229 KB

english, 2013

13

[ACM Press the 9th International Conference - Marseille, France (2019.11.20-2019.11.23)] Proceedings of the 9th International Conference on Digital Public Health - DPH2019 - Unsupervised Classification of Health Content on Reddit

Barros, Joana M., Buitelaar, Paul, Duggan, Jim, Rebholz-Schuhmann, Dietrich

Year:

2019

Language:

english

File:

PDF, 942 KB

english, 2019

14

[IEEE 2011 22nd International Conference on Database and Expert Systems Applications (DEXA) - Toulouse, France (2011.08.29-2011.09.2)] 2011 22nd International Workshop on Database and Expert Systems Applications - Exploitation of Cross-References between Terminological Resources within the CALBC Context

Jimenez-Ruiz, Ernesto, Rebholz-Schuhmann, Dietrich, Lewin, Ian

Year:

2011

Language:

english

File:

PDF, 509 KB

english, 2011

15

Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text

Gaudan, S., Jimeno Yepes, A., Lee, V., Rebholz-Schuhmann, D.

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2008

Language:

english

File:

PDF, 746 KB

english, 2008

16

Poseidon: An information retrieval and extraction system for metagenomic marine science

Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Błażewicz

Journal:

Ecological Informatics

Year:

2012

Language:

english

File:

PDF, 783 KB

english, 2012

17

Predicting knee osteoarthritis severity: comparative modeling based on patient’s data and plain X-ray images

Abedin, Jaynal, Antony, Joseph, McGuinness, Kevin, Moran, Kieran, O’Connor, Noel E., Rebholz-Schuhmann, Dietrich, Newell, John

Journal:

Scientific Reports

Year:

2019

File:

PDF, 1.99 MB

2019

18

Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing

Karim, Md. Rezaul, Cochez, Michael, Zappa, Achille, Sahay, Ratnesh, Rebholz-Schuhmann, Dietrich, Beyan, Oya, Decker, Stefan

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2020

File:

PDF, 5.08 MB

2020

19

Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb

Kevin Nagel, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.70 MB

english, 2009

20

The CALBC RDF Triple store: retrieval over large literature content

Croset, Samuel, Grabmüller, Christoph, Li, Chen, Kavaliauskas, Silvestras, Rebholz-Schuhmann, Dietrich

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 418 KB

english, 2011

21

SAFE: SPARQL Federation over RDF Data Cubes with Access Control

Khan, Yasar, Saleem, Muhammad, Mehdi, Muntazir, Hogan, Aidan, Mehmood, Qaiser, Rebholz-Schuhmann, Dietrich, Sahay, Ratnesh

Journal:

Journal of Biomedical Semantics

Year:

2017

Language:

english

File:

PDF, 3.14 MB

english, 2017

22

Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data

Jha, Alokkumar, Khan, Yasar, Mehdi, Muntazir, Karim, Md Rezaul, Mehmood, Qaiser, Zappa, Achille, Rebholz-Schuhmann, Dietrich, Sahay, Ratnesh

Journal:

Journal of Biomedical Semantics

Year:

2017

Language:

english

File:

PDF, 2.77 MB

english, 2017

23

Using argumentation to extract key sentences from biomedical abstracts

Patrick Ruch, Celia Boyer, Christine Chichester, Imad Tbahriti, Antoine Geissbühler, Paul Fabry, Julien Gobeill, Violaine Pillet, Dietrich Rebholz-Schuhmann, Christian Lovis, Anne-Lise Veuthey

Journal:

International Journal of Medical Informatics

Year:

2007

Language:

english

File:

PDF, 684 KB

english, 2007

24

Ontology refinement for improved information retrieval

Antonio Jimeno-Yepes, Rafael Berlanga-Llavori, Dietrich Rebholz-Schuhmann

Journal:

Information Processing & Management

Year:

2010

Language:

english

File:

PDF, 200 KB

english, 2010

25

MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline

Kim, J.-j., Pezik, P., Rebholz-Schuhmann, D.

Journal:

Year:

2008

Language:

english

File:

PDF, 167 KB

english, 2008

26

Automatic extraction of mutations from Medline and cross-validation with OMIM

Rebholz-Schuhmann, D.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 248 KB

english, 2004

27

Thematic series on biomedical ontologies in JBMS: challenges and new directions

Hoehndorf, Robert, Haendel, Melissa, Stevens, Robert, Rebholz-Schuhmann, Dietrich

Journal:

Journal of Biomedical Semantics

Year:

2014

Language:

english

File:

PDF, 287 KB

english, 2014

28

PCorral--interactive mining of protein interactions from MEDLINE

Li, C., Jimeno-Yepes, A., Arregui, M., Kirsch, H., Rebholz-Schuhmann, D.

Journal:

Year:

2013

Language:

english

File:

PDF, 569 KB

english, 2013

29

A Semantic Model for Federated Queries Over a Normalized Corpus

Croset, Samuel, Grabmüller, Christoph, Rebholz-Schuhmann, Dietrich

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 741 KB

english, 2011

30

Categorization of services for seeking information in biomedical literature: a typology for improvement of practice

Kim, J.-j., Rebholz-Schuhmann, D.

Journal:

Briefings in Bioinformatics

Year:

2008

Language:

english

File:

PDF, 198 KB

english, 2008

31

Response to comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'

Trieschnigg, D., Pezik, P., Lee, V., de Jong, F., Kraaij, W., Rebholz-Schuhmann, D.

Journal:

Year:

2009

Language:

english

File:

PDF, 51 KB

english, 2009

32

Towards Virtual Knowledge Broker services for semantic integration of life science literature and data sources

Harrow, Ian, Filsell, Wendy, Woollard, Peter, Dix, Ian, Braxenthaler, Michael, Gedye, Richard, Hoole, David, Kidd, Richard, Wilson, Jabe, Rebholz-Schuhmann, Dietrich

Journal:

Drug Discovery Today

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

33

WRESTLING WITH BIOMEDICAL RESEARCH RESULTS: LANGUAGE RESOURCES AND LITERATURE ANALYSIS

REBHOLZ-SCHUHMANN, D., COLLIER, NIGEL, PARK, JONG C., WONG, LIMSOON

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2010

Language:

english

File:

PDF, 103 KB

english, 2010

34

Biomedical Semantics: the Hub for Biomedical Research 2.0

Dietrich Rebholz-Schuhmann, Goran Nenadic

Journal:

Journal of Biomedical Semantics

Year:

2010

Language:

english

File:

PDF, 327 KB

english, 2010

35

MeSH Up: effective MeSH text classification for improved document retrieval

Trieschnigg, D., Pezik, P., Lee, V., de Jong, F., Kraaij, W., Rebholz-Schuhmann, D.

Journal:

Year:

2009

Language:

english

File:

PDF, 119 KB

english, 2009

36

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Hoehndorf, Robert, Dumontier, Michel, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, Schofield, Paul N., Gkoutos, Georgios V., Androulakis, Ioannis P.

Journal:

Year:

2011

Language:

english

File:

PDF, 387 KB

english, 2011

37

Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach

Timilsina, Mohan, Yang, Haixuan, Sahay, Ratnesh, Rebholz-Schuhmann, Dietrich

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.51 MB

english, 2019

38

Computer-Assisted Generation of a Protein-Interaction Database for Nuclear Receptors

Albert, Sylvie, Gaudan, Sylvain, Knigge, Heidrun, Raetsch, Andreas, Delgado, Asuncion, Huhse, Bettina, Kirsch, Harald, Albers, Michael, Rebholz-Schuhmann, Dietrich, Koegl, Manfred

Journal:

Molecular Endocrinology

Year:

2003

Language:

english

File:

PDF, 462 KB

english, 2003

39

The CALBC RDF Triple store: retrieval over large literature content

Croset, Samuel, Grabmüller, Christoph, Li, Chen, Kavaliauskas, Silvestras, Rebholz-Schuhmann, Dietrich

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 418 KB

2011

40

Harmonization of gene/protein annotations: towards a gold standard MEDLINE

Campos, D., Matos, S., Lewin, I., Oliveira, J. L., Rebholz-Schuhmann, D.

Journal:

Year:

2012

Language:

english

File:

PDF, 875 KB

english, 2012

41

Towards mature use of semantic resources for biomedical analyses

D Rebholz-Schuhmann, F Rinaldi, S Pyysalo, N Collier, U Hahn

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 103 KB

english, 2011

42

A common layer of interoperability for biomedical ontologies based on OWL EL

Hoehndorf, R., Dumontier, M., Oellrich, A., Wimalaratne, S., Rebholz-Schuhmann, D., Schofield, P., Gkoutos, G. V.

Journal:

Year:

2011

Language:

english

File:

PDF, 127 KB

english, 2011

43

[ACM Press the WSDM '09 Workshop - Barcelona, Spain (2009.02.09-2009.02.09)] Proceedings of the WSDM '09 Workshop on Exploiting Semantic Annotations in Information Retrieval - ESAIR '09 - Terminological cleansing for improved information retrieval based on ontological terms

Jimeno-Yepes, Antonio, Berlanga-Llavori, Rafael, Rebholz-Schuhmann, Dietrich

Year:

2009

Language:

english

File:

PDF, 178 KB

english, 2009

44

Dealing with repetitions in sequencing by hybridization

Jacek Blazewicz, Fred Glover, Marta Kasprzak, Wojciech T. Markiewicz, Ceyda OĞuz, Dietrich Rebholz-Schuhmann, Aleksandra Swiercz

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 189 KB

english, 2006

45

Ontology design patterns to disambiguate relations between genes and gene products in GENIA

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 460 KB

english, 2011

46

Evaluation and Cross-Comparison of Lexical Entities of Biological Interest (LexEBI)

Rebholz-Schuhmann, Dietrich, Kim, Jee-Hyub, Yan, Ying, Dixit, Abhishek, Friteyre, Caroline, Hoehndorf, Robert, Backofen, Rolf, Lewin, Ian, Smalheiser, Neil R.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.39 MB

english, 2013

47

A Semantic Model for Federated Queries Over a Normalized Corpus

Croset, Samuel, Grabmüller, Christoph, Rebholz-Schuhmann, Dietrich

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 741 KB

2011

48

Protein annotation by EBIMed

Rebholz-Schuhmann, Dietrich, Kirsch, Harald, Arregui, Miguel, Gaudan, Sylvain, Rynbeek, Mark, Stoehr, Peter

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 610 KB

english, 2006

49

Integrating protein-protein interactions and text mining for protein function prediction

Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich Rebholz-Schuhmann

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 534 KB

english, 2008

50

Reuse of terminological resources for efficient ontological engineering in Life Sciences

Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz, Rafael Berlanga-Llavori, Dietrich Rebholz-Schuhmann

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 548 KB

english, 2009

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